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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
72
ChIP-seq
6
WGBS
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
72
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
31
histone
31
histone modification
29
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
November, 2018
4
December, 2018
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
January, 2019
1
May, 2023
1
November, 2019
Available data
456
bam
434
bigWig
402
tsv
58
fastq
22
bed narrowPeak
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
487
Homo sapiens
Biosample type
485
tissue
2
primary cell
1
in vitro differentiated cells
Organ
851
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
431
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
12
blood
12
bodily fluid
9
vein
7
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
488
AMP
Genome assembly (visualization)
417
hg19
416
GRCh38
Lab
488
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
lab.title!
Anna Gloyn, Oxford
month_released!
November, 2018
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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