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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
24
total RNA-seq
11
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
WGBS
Assay category
142
DNA binding
31
Transcription
11
DNA accessibility
7
3D chromatin structure
3
DNA methylation
Target of assay
97
histone
97
histone modification
85
narrow histone mark
48
control
12
broad histone mark
Date released
109
October, 2019
28
November, 2017
22
July, 2019
15
February, 2020
10
October, 2017
6
February, 2021
4
May, 2019
2
March, 2020
February, 2023
Available data
357
bam
313
bigWig
295
bed narrowPeak
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
196
Homo sapiens
Biosample type
186
tissue
10
primary cell
Organ
795
pancreas
642
connective tissue
480
adipose tissue
402
liver
396
epithelium
263
heart
248
kidney
158
brain
151
bone element
118
vasculature
116
blood vessel
81
artery
49
musculature of body
38
limb
37
embryo
24
eye
20
lung
17
nerve
15
blood
15
bodily fluid
12
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
110
hg19
104
GRCh38
Lab
196
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
lab.title!
Bing Ren, UCSD
month_released!
February, 2023
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
WGBS
tissue
tibial nerve
11
5
1
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
tibial artery
5
1
1
+ See 82 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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