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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
9
ChIP-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
37
DNA accessibility
19
Transcription
9
DNA binding
1
DNA methylation
Target of assay
7
control
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
8
January, 2021
3
January, 2019
3
November, 2018
1
February, 2020
1
January, 2018
1
July, 2019
1
June, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
70
Homo sapiens
Biosample type
53
tissue
10
primary cell
7
cell line
Organ
851
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
402
liver
299
heart
248
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
29
hg19
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
lab.title!
Bing Ren, UCSD
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
1
1
cell line
GM12878
1
6
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