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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
ChIP-seq
1
WGBS
Assay category
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA binding
1
DNA methylation
Target of assay
control
1
histone
1
histone modification
1
narrow histone mark
Date released
7
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
802
pancreas
621
connective tissue
457
adipose tissue
epithelium
325
liver
279
heart
238
kidney
159
bone element
131
vasculature
130
blood vessel
128
brain
107
artery
54
eye
43
musculature of body
30
embryo
21
limb
20
lung
16
skeleton
9
blood
9
bodily fluid
7
vein
6
nerve
5
gonad
5
ovary
4
spleen
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
21
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
lab.title!
ITG
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
21 results
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ATAC-seq
total RNA-seq
Hi-C
ChIP-seq
WGBS
tissue
tibial nerve
1
5
gastrocnemius medialis
1
4
tibial artery
1
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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