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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
42
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
42
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
histone
31
histone modification
30
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
24
August, 2017
18
October, 2018
12
July, 2019
3
January, 2019
3
November, 2018
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
500
bam
477
bigWig
401
tsv
102
fastq
64
bed narrowPeak
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
456
Homo sapiens
Biosample type
447
tissue
7
cell line
2
primary cell
1
in vitro differentiated cells
Organ
702
pancreas
586
connective tissue
450
adipose tissue
384
epithelium
366
liver
258
heart
242
kidney
158
bone element
148
vasculature
146
blood vessel
116
artery
63
brain
53
eye
37
limb
30
musculature of body
25
embryo
20
lung
17
nerve
16
skeleton
12
spleen
7
blood
7
bodily fluid
4
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
457
AMP
Genome assembly (visualization)
416
hg19
415
GRCh38
Lab
457
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
cell line
GM12878
6
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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