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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
75
ChIP-seq
8
WGBS
5
ATAC-seq
4
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
75
DNA binding
8
DNA methylation
5
DNA accessibility
Target of assay
32
control
31
histone
31
histone modification
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
5
November, 2018
4
December, 2018
3
March, 2020
2
February, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
January, 2019
1
May, 2023
1
November, 2019
Available data
466
bam
441
bigWig
403
tsv
68
fastq
27
bed narrowPeak
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
493
Homo sapiens
Biosample type
490
tissue
2
primary cell
1
cell line
1
in vitro differentiated cells
Organ
854
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
494
AMP
Genome assembly (visualization)
418
GRCh38
417
hg19
Lab
494
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
494 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
spleen
8
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
cell line
MCF-7
1
in vitro differentiated cells
white fat cell
1
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