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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
Assay category
10
DNA binding
Target of assay
454
histone modification
453
histone
326
control
288
narrow histone mark
164
broad histone mark
81
transcription factor
10
RNA binding protein
8
recombinant protein
2
chromatin remodeller
Date released
6
August, 2017
2
November, 2017
1
April, 2019
1
November, 2019
Available data
103
bam
100
bigWig
99
bed narrowPeak
bigBed narrowPeak
89
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
10
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
3
tissue
Organ
4
connective tissue
3
pancreas
2
liver
1
epithelium
1
kidney
Project
10
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
10
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
August, 2018
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
in vitro differentiated cells
adipocyte
4
cell line
HepG2
2
EndoC_BH1
1
tissue
islet of Langerhans
2
kidney
1
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