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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
121
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
28
control
12
broad histone mark
Date released
86
October, 2019
28
November, 2017
17
July, 2019
12
February, 2020
10
October, 2017
May, 2019
2
March, 2020
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
146
tissue
10
primary cell
Organ
651
connective tissue
633
pancreas
481
adipose tissue
362
liver
289
epithelium
253
heart
158
bone element
156
brain
142
vasculature
140
blood vessel
114
artery
58
kidney
55
eye
48
musculature of body
37
embryo
37
limb
17
nerve
16
skeleton
12
spleen
9
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
99
hg19
91
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
May, 2019
organ_slims!
lymph node
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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