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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
135
DNA binding
29
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
42
control
12
broad histone mark
Date released
102
October, 2019
28
November, 2017
17
July, 2019
13
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
285
bam
253
bigWig
230
bed narrowPeak
bigBed narrowPeak
118
tagAlign
49
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
176
Homo sapiens
Biosample type
166
tissue
10
primary cell
Organ
651
connective tissue
634
pancreas
481
adipose tissue
362
liver
290
epithelium
259
heart
159
brain
158
bone element
153
vasculature
151
blood vessel
116
artery
59
kidney
55
eye
49
musculature of body
38
limb
37
embryo
17
nerve
16
skeleton
12
spleen
9
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
104
hg19
96
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
tibial nerve
11
5
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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