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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
RRBS
1
pCHi-C
Assay category
18
DNA binding
9
Transcription
5
3D chromatin structure
3
DNA methylation
1
DNA accessibility
Target of assay
13
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
July, 2019
9
May, 2019
8
October, 2019
4
August, 2021
4
March, 2020
2
November, 2017
1
February, 2020
Available data
83
bam
70
bigWig
59
bed narrowPeak
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
37
Homo sapiens
Biosample type
23
tissue
14
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
288
heart
245
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
15
hg19
6
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
month_released!
April, 2019
organ_slims!
artery
mammary gland
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RRBS
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
4
2
1
ascending aorta
3
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
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