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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
RRBS
1
pCHi-C
Assay category
13
DNA binding
9
Transcription
5
3D chromatin structure
3
DNA methylation
1
DNA accessibility
Target of assay
13
control
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
July, 2019
9
May, 2019
4
August, 2021
4
March, 2020
3
October, 2019
2
November, 2017
1
February, 2020
Available data
32
bam
22
bigWig
13
bed narrowPeak
bigBed narrowPeak
10
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
32
Homo sapiens
Biosample type
23
tissue
9
primary cell
Organ
753
pancreas
587
connective tissue
450
adipose tissue
384
epithelium
366
liver
258
heart
242
kidney
159
bone element
148
vasculature
146
blood vessel
artery
63
brain
53
eye
37
limb
30
musculature of body
25
embryo
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
month_released!
April, 2020
organ_slims!
artery
target.investigated_as!
histone
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RRBS
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
4
2
1
ascending aorta
3
2
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
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