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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
total RNA-seq
179
ChIP-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
184
Transcription
179
DNA binding
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
103
control
63
histone modification
62
histone
43
narrow histone mark
19
broad histone mark
13
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
40
May, 2022
August, 2021
13
December, 2017
10
July, 2019
9
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
678
bam
606
bigWig
465
fastq
425
bed narrowPeak
bigBed narrowPeak
165
tsv
83
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
400
Homo sapiens
Biosample type
314
tissue
77
cell line
8
primary cell
1
in vitro differentiated cells
Organ
850
pancreas
651
connective tissue
480
adipose tissue
441
epithelium
398
liver
201
heart
159
bone element
156
brain
136
vasculature
134
blood vessel
119
kidney
112
artery
55
eye
48
musculature of body
37
limb
29
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
400
AMP
Genome assembly (visualization)
254
hg19
203
GRCh38
Lab
360
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
August, 2021
May, 2019
BIOSAMPLE
ASSAY
400 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
167
107
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
islet of Langerhans
1
pituitary gland
1
cell line
HepG2
5
67
1
1
1
2
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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