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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
single cell RNA-seq
54
total RNA-seq
7
ChIP-seq
6
snATAC-seq
4
RRBS
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
114
Transcription
81
DNA accessibility
7
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
47
September, 2023
October, 2019
14
May, 2023
10
July, 2019
February, 2021
5
April, 2019
3
December, 2019
2
March, 2020
1
June, 2019
1
May, 2019
Available data
167
bed narrowPeak
116
bam
109
bigWig
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
57
txt
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
213
Homo sapiens
Biosample type
200
tissue
9
primary cell
4
cell line
Organ
812
pancreas
423
liver
395
epithelium
225
heart
213
kidney
200
connective tissue
95
adipose tissue
73
brain
73
vasculature
71
blood vessel
49
musculature of body
44
artery
37
embryo
34
eye
20
lung
15
blood
15
bodily fluid
12
spleen
9
bone element
9
limb
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
166
AMP
47
KPMP
Genome assembly (visualization)
81
GRCh38
11
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
22
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
2
audit script error
files.file_type!
bigBed narrowPeak
month_released!
February, 2021
March, 2023
October, 2019
BIOSAMPLE
ASSAY
213 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
RNA microarray
STARR-seq
pCHi-C
Hi-C
small RNA-seq
tissue
kidney
75
59
49
5
6
1
1
metanephros
1
1
kidney interstitium
1
renal glomerulus
1
primary cell
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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