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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
169
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA binding
173
Transcription
7
DNA methylation
4
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
108
control
68
histone modification
67
histone
46
narrow histone mark
24
transcription factor
21
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
May, 2022
35
August, 2021
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
602
bigWig
465
fastq
421
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
393
Homo sapiens
Biosample type
272
tissue
108
cell line
12
primary cell
1
in vitro differentiated cells
Organ
749
pancreas
655
connective tissue
480
adipose tissue
393
liver
367
epithelium
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
47
musculature of body
38
limb
37
embryo
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
393
AMP
Genome assembly (visualization)
251
hg19
205
GRCh38
Lab
362
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
May, 2022
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
107
147
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
85
14
1
2
2
1
2
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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