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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
histone modification
590
histone
350
narrow histone mark
343
control
239
broad histone mark
104
transcription factor
16
RNA binding protein
8
recombinant protein
5
nucleotide modification
2
chromatin remodeller
Date released
7
October, 2019
6
August, 2017
5
May, 2021
May, 2024
2
November, 2017
1
April, 2019
1
August, 2021
1
November, 2018
1
November, 2019
Available data
192
bam
189
bigWig
188
bed narrowPeak
bigBed narrowPeak
171
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
12
cell line
9
in vitro differentiated cells
3
tissue
Organ
8
kidney
4
connective tissue
4
liver
3
pancreas
1
epithelium
Project
24
AMP
Genome assembly (visualization)
15
hg19
14
GRCh38
Lab
18
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
May, 2024
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
24 results
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Clear Filters
ChIP-seq
cell line
HepG2
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
tissue
islet of Langerhans
2
kidney
1
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