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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
115
DNA binding
24
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
90
histone
90
histone modification
83
narrow histone mark
28
control
7
broad histone mark
Date released
86
October, 2019
28
November, 2017
17
July, 2019
12
February, 2020
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
234
bam
215
bigWig
197
bed narrowPeak
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
149
Homo sapiens
Biosample type
139
tissue
10
primary cell
Organ
850
pancreas
655
connective tissue
480
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
153
vasculature
151
blood vessel
149
brain
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
99
hg19
90
GRCh38
Lab
149
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed narrowPeak
month_released!
October, 2017
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
5
1
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
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