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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
89
total RNA-seq
9
WGBS
2
RRBS
1
DNase-seq
Assay category
242
DNA binding
89
Transcription
11
DNA methylation
1
DNA accessibility
Target of assay
150
histone modification
149
histone
79
broad histone mark
69
narrow histone mark
47
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
398
May, 2021
343
August, 2017
341
May, 2020
319
August, 2021
237
October, 2019
205
February, 2023
198
May, 2022
168
July, 2018
96
July, 2019
94
November, 2017
61
November, 2019
59
September, 2018
59
September, 2020
58
March, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
23
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2020
14
November, 2018
10
December, 2019
9
January, 2019
7
August, 2020
7
January, 2018
6
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
285
fastq
282
bam
259
bigWig
129
bed narrowPeak
89
tsv
70
tagAlign
bigBed narrowPeak
33
bed bed3+
28
bed broadPeak
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
342
Homo sapiens
Biosample type
236
tissue
67
in vitro differentiated cells
40
primary cell
Organ
171
pancreas
122
connective tissue
55
adipose tissue
48
liver
26
epithelium
musculature of body
Project
343
AMP
Genome assembly (visualization)
219
hg19
211
GRCh38
Lab
343
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bigBed narrowPeak
organ_slims!
musculature of body
thymus
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
42
89
liver
43
3
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
1
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
1
1
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