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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 264ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 1DNase-seq
Assay category
  • 264DNA binding
  • 89Transcription
  • 15DNA methylation
  • 1DNA accessibility
Target of assay
  • 169histone modification
  • 168histone
  • 91broad histone mark
  • 76narrow histone mark
  • 50control
  • 45transcription factor
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 715February, 2021
  • 399May, 2021
  • 369August, 2017
  • 341May, 2020
  • 319August, 2021
  • 244October, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 106July, 2019
  • 94November, 2017
  • 64March, 2020
  • 61November, 2019
  • 59September, 2018
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 44December, 2017
  • 40May, 2024
  • 39February, 2018
  • 31October, 2018
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 17October, 2017
  • 16April, 2019
  • 16January, 2021
  • 15May, 2023
  • 15November, 2018
  • 15November, 2020
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 287fastq
  • 282bam
  • 272bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 368Homo sapiens
Biosample type
  • 262tissue
  • 67in vitro differentiated cells
  • 40primary cell
Organ
  • 171pancreas
  • 122connective tissue
  • 55adipose tissue
  • 48liver
  • 26epithelium
  • 26musculature of body
Project
  • 369AMP
Genome assembly (visualization)
  • 234hg19
  • 211GRCh38
Lab
  • 369AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 10inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

369 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans4289
liver4331
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
white adipose tissue12
adipose tissue13
pancreas2
right lobe of liver1
in vitro differentiated cells
adipocyte67
primary cell
pancreatic alpha cell13
pancreatic beta cell13
pancreatic endocrine cell12
skeletal muscle myoblast11
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