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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
84
ATAC-seq
74
total RNA-seq
52
ChIP-seq
7
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
91
DNA accessibility
52
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
26
histone
26
histone modification
15
control
14
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
649
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
313
August, 2021
230
October, 2019
200
May, 2022
170
February, 2023
168
July, 2018
94
July, 2019
92
November, 2017
61
November, 2019
60
March, 2020
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
22
February, 2020
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
12
May, 2019
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
118
bed narrowPeak
117
tsv
64
bam
64
xls
61
bigWig
57
txt
38
tagAlign
17
fastq
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
330
Homo sapiens
Biosample type
241
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
10
brain
10
pancreas
8
embryo
6
blood vessel
6
connective tissue
6
epithelium
vasculature
2
adipose tissue
2
artery
1
spleen
Project
331
AMP
Genome assembly (visualization)
113
GRCh38
67
hg19
Lab
162
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
organ_slims!
vasculature
BIOSAMPLE
ASSAY
331 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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