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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
42
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
42
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
RNA binding protein
Date released
641
February, 2021
391
May, 2021
363
August, 2017
341
May, 2020
236
October, 2019
226
August, 2021
200
May, 2022
168
July, 2018
161
February, 2023
92
November, 2017
81
July, 2019
60
November, 2019
59
September, 2018
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
44
December, 2017
39
February, 2018
31
October, 2018
22
February, 2020
19
April, 2020
17
May, 2019
17
October, 2017
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
7
August, 2020
6
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
April, 2019
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
105
bed narrowPeak
64
xls
57
txt
49
bam
46
bigWig
31
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
225
Homo sapiens
Biosample type
137
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
226
AMP
Genome assembly (visualization)
105
GRCh38
59
hg19
Lab
128
Katalin Susztak, Upenn
59
AMP-T2D consortium
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed narrowPeak
organ_slims!
heart
skeleton
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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