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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
small RNA-seq
4
total RNA-seq
3
single cell RNA-seq
2
Hi-C
1
ATAC-seq
1
RRBS
Assay category
11
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
3
control
Date released
86
October, 2019
November, 2017
15
July, 2019
12
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
15
bigWig
13
bam
11
tsv
2
bed bed3+
2
hdf5
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
bigBed narrowPeak
Organism
15
Homo sapiens
Biosample type
10
tissue
5
primary cell
Organ
25
heart
18
connective tissue
17
brain
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
15
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
15
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
month_released!
November, 2017
organ_slims!
epithelium
BIOSAMPLE
ASSAY
15 results
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small RNA-seq
total RNA-seq
single cell RNA-seq
Hi-C
ATAC-seq
RRBS
tissue
diencephalon
1
1
frontal cortex
1
1
temporal lobe
1
1
brain
1
cerebellum
1
+ See 2 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain pericyte
1
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