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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
7
WGBS
1
single cell RNA-seq
Assay category
101
DNA binding
7
DNA methylation
1
Transcription
Target of assay
77
control
15
histone
15
histone modification
10
narrow histone mark
9
transcription factor
5
broad histone mark
2
RNA binding protein
1
recombinant protein
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
479
bam
414
bigWig
412
fastq
386
bed narrowPeak
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
109
Homo sapiens
Biosample type
71
cell line
34
tissue
4
primary cell
Organ
68
liver
28
brain
5
spleen
4
pancreas
3
blood
3
bodily fluid
2
epithelium
2
vasculature
1
blood vessel
Project
109
AMP
Genome assembly (visualization)
23
hg19
7
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
cell line
HepG2
67
1
GM12878
3
tissue
cingulate gyrus
8
layer of hippocampus
6
spleen
3
2
substantia nigra
4
caudate nucleus
3
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
See all biosamples
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