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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
8
ATAC-seq
7
WGBS
1
single cell RNA-seq
Assay category
16
DNA binding
8
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
9
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
1
recombinant protein
1
transcription factor
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
105
fastq
102
bam
94
bigWig
85
bed narrowPeak
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
32
Homo sapiens
Biosample type
26
tissue
5
cell line
1
primary cell
Organ
10
brain
9
pancreas
6
spleen
3
blood
3
bodily fluid
2
liver
1
adipose tissue
1
connective tissue
Project
32
AMP
Genome assembly (visualization)
15
GRCh38
7
hg19
Lab
31
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
July, 2019
September, 2018
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
tissue
brain
9
body of pancreas
4
2
spleen
3
1
2
pancreas
2
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
GM12878
3
HepG2
1
1
primary cell
pancreatic cell
1
See all biosamples
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