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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 184ChIP-seq
  • 30total RNA-seq
  • 19ATAC-seq
  • 5Hi-C
  • 4pCHi-C
  • 2DNase-seq
Assay category
  • 184DNA binding
  • 30Transcription
  • 21DNA accessibility
  • 53D chromatin structure
Target of assay
  • 138histone
  • 138histone modification
  • 121narrow histone mark
  • 39control
  • 17broad histone mark
  • 7recombinant protein
  • 7transcription factor
Date released
  • 715February, 2021
  • 399May, 2021
  • 369August, 2017
  • 341May, 2020
  • 319August, 2021
  • 244October, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 106July, 2019
  • 94November, 2017
  • 64March, 2020
  • 61November, 2019
  • 59September, 2018
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 44December, 2017
  • 40May, 2024
  • 39February, 2018
  • 31October, 2018
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 17October, 2017
  • 16April, 2019
  • 16January, 2021
  • 15May, 2023
  • 15November, 2018
  • 15November, 2020
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 250bam
  • 207bigWig
  • 189bed narrowPeak
  • bigBed narrowPeak
  • 49tagAlign
  • 16tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 244Homo sapiens
Biosample type
  • 195tissue
  • 22cell line
  • 21primary cell
  • 6in vitro differentiated cells
Organ
  • 86brain
  • 29kidney
  • 23limb
  • 21epithelium
  • 21eye
  • 16nerve
  • 14blood vessel
  • 14vasculature
  • 11pancreas
  • 8heart
  • 8vein
  • 7liver
  • 6artery
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1connective tissue
  • 1lymph node
  • 1skin of body
Project
  • 244AMP
Genome assembly (visualization)
  • 147hg19
  • 141GRCh38
Lab
  • 244AMP-T2D consortium
Audit category:
  • 23inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

244 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
tissue
islet of Langerhans2114134
tibial nerve1141
heart521
brain51
liver51
cell line
Panc171
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein71
epithelial cell of proximal tubule7
kidney glomerular epithelial cell11
kidney tubule cell11
Heart fetal (cardiac muscle cell)1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
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