Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 67ChIP-seq
  • 6WGBS
  • 4ATAC-seq
  • 3small RNA-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 67DNA binding
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 31histone
  • 31histone modification
  • 24control
  • 20broad histone mark
  • 12transcription factor
  • 11narrow histone mark
Date released
  • 386February, 2021
  • 55August, 2017
  • 18October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1March, 2020
  • 1May, 2023
  • 1November, 2019
  • 1October, 2017
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • 13bed narrowPeak
  • bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 480Homo sapiens
Biosample type
  • 478tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 481AMP
Genome assembly (visualization)
  • 416hg19
  • 415GRCh38
Lab
  • 481AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

481 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue3821321
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71011
omental fat pad5811
white adipose tissue12
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego