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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
46
ATAC-seq
25
ChIP-seq
2
single cell RNA-seq
Assay category
63
Transcription
46
DNA accessibility
25
DNA binding
Target of assay
20
control
4
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
66
February, 2021
35
February, 2023
23
October, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
May, 2019
Available data
144
bam
116
bigWig
101
bed narrowPeak
63
tsv
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
134
Homo sapiens
Biosample type
66
cell line
66
tissue
2
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
134
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
2
tibial nerve
5
1
11
tibial artery
1
1
5
pulmonary artery
2
islet of Langerhans
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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