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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
6
ChIP-seq
3
pCHi-C
1
ATAC-seq
Assay category
9
DNA accessibility
6
DNA binding
Target of assay
6
control
Date released
8
January, 2021
3
January, 2019
3
November, 2018
2
March, 2020
1
January, 2018
1
May, 2021
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
bigBed narrowPeak
2
tsv
Organism
18
Homo sapiens
Biosample type
9
primary cell
7
cell line
2
tissue
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
9
AMP
9
T1D
Genome assembly (visualization)
1
hg19
Lab
9
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
18 results
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Clear Filters
snATAC-seq
ChIP-seq
pCHi-C
ATAC-seq
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
cell line
GM12878
6
1
tissue
gastric (mucosa of stomach)
1
sigmoid colon
1
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