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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
24
ChIP-seq
24
total RNA-seq
8
snATAC-seq
5
pCHi-C
1
RRBS
Assay category
38
DNA accessibility
24
DNA binding
24
Transcription
1
DNA methylation
Target of assay
18
control
6
histone
6
histone modification
6
narrow histone mark
Date released
41
October, 2019
31
February, 2023
8
January, 2021
3
January, 2019
3
November, 2018
2
February, 2020
1
January, 2018
1
July, 2019
1
June, 2019
1
March, 2020
Available data
114
bed narrowPeak
109
bam
92
bigWig
bigBed narrowPeak
60
fastq
11
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
92
Homo sapiens
Biosample type
75
tissue
10
primary cell
7
cell line
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
8
T1D
Genome assembly (visualization)
34
hg19
5
GRCh38
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
6
14
4
retina
15
3
tibial nerve
1
11
5
pigmented layer of retina
12
2
ovary
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
1
1
cell line
GM12878
1
6
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