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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124ChIP-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
Assay category
  • 124DNA binding
  • 24Transcription
  • 4DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 96histone
  • 96histone modification
  • 84narrow histone mark
  • 31control
  • 12broad histone mark
Date released
  • 86October, 2019
  • 28November, 2017
  • 17July, 2019
  • 12February, 2020
  • 10October, 2017
  • 3May, 2019
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 159Homo sapiens
Biosample type
  • 149tissue
  • 10primary cell
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 159AMP
Genome assembly (visualization)
  • 99hg19
  • 91GRCh38
Lab
  • 159AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

159 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain14111
cingulate gyrus8
layer of hippocampus7
cerebellum (Hemisphere)3111
substantia nigra51
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cerebellar granule cell2
choroid plexus epithelial cell11
Purkinje cell1
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