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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 138ChIP-seq
  • 21ATAC-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 138DNA binding
  • 21DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 69histone
  • 69histone modification
  • 40broad histone mark
  • 35control
  • 34transcription factor
  • 28narrow histone mark
  • 4RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 122August, 2017
  • 18July, 2019
  • 18October, 2018
  • 14February, 2023
  • 5August, 2021
  • 5November, 2020
  • 3June, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 655Homo sapiens
Biosample type
  • 537tissue
  • 94in vitro differentiated cells
  • 24primary cell
  • 1stem cell
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 655AMP
  • 1T1D
Genome assembly (visualization)
  • 562hg19
  • 541GRCh38
Lab
  • 651AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

656 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3821231
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71011
omental fat pad5811
in vitro differentiated cells
adipocyte56761
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast521
pancreatic stellate cell4
cardiac fibroblast21
mesenchymal stem cell of adipose11
adult endothelial progenitor cell1
stem cell
mesenchymal stem cell1
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