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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 70ChIP-seq
  • 47ATAC-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 70DNA binding
  • 47DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 41histone
  • 41histone modification
  • 23broad histone mark
  • 20control
  • 18narrow histone mark
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 40May, 2024
  • 36February, 2023
  • 25July, 2019
  • 11April, 2019
  • 8October, 2019
  • 7March, 2020
  • 6May, 2019
  • 3February, 2020
  • 3May, 2021
  • 2June, 2019
Available data
  • 224bigWig
  • 211bam
  • 191bed narrowPeak
  • 168tsv
  • bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 299Homo sapiens
Biosample type
  • 225tissue
  • 66cell line
  • 7primary cell
  • 1in vitro differentiated cells
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 299AMP
Genome assembly (visualization)
  • 172GRCh38
  • 97hg19
Lab
  • 259AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 2inconsistent ontology term
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

299 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium1840
coronary artery1236
heart left ventricle183724111
heart right ventricle1712211
right cardiac atrium18111
cell line
smooth muscle cell of the coronary artery5268
primary cell
cardiac fibroblast21
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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