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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 28ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2DNase-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 125Transcription
  • 83DNA accessibility
  • 28DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 12control
  • 8histone
  • 8histone modification
  • 8transcription factor
  • 7recombinant protein
  • 5narrow histone mark
  • 3broad histone mark
  • 1RNA binding protein
Date released
  • 130August, 2021
  • 47September, 2023
  • 29October, 2019
  • 14May, 2023
  • 10July, 2019
  • 8February, 2021
  • 5April, 2019
  • 3December, 2019
  • 2March, 2020
  • 1June, 2019
  • 1May, 2019
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 250Homo sapiens
Biosample type
  • 212tissue
  • 20primary cell
  • 18cell line
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 203AMP
  • 47KPMP
Genome assembly (visualization)
  • 102GRCh38
  • 32hg19
Lab
  • 142Katalin Susztak, Upenn
  • 59AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 18inconsistent ontology term
  • 7audit script error
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

250 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
small RNA-seq
tissue
kidney7564499611
metanephros11
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
primary cell
epithelial cell of proximal tubule181
kidney epithelial cell111
kidney glomerular epithelial cell11
kidney tubule cell11
renal cortical epithelial cell11
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
RCC 7860 VHL1
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