Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 8ATAC-seq
  • 7total RNA-seq
  • 4Hi-C
  • 1WGBS
Assay category
  • 18DNA binding
  • 8DNA accessibility
  • 7Transcription
  • 43D chromatin structure
  • 1DNA methylation
Target of assay
  • 17control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 23October, 2019
  • 6February, 2021
  • 5July, 2019
  • 3February, 2020
  • 1May, 2019
Available data
  • 114bam
  • 92bed narrowPeak
  • 91bigWig
  • bigBed narrowPeak
  • 36bed bed3+
  • 36bed broadPeak
  • 36bigBed broadPeak
  • 7tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 38Homo sapiens
Biosample type
  • 38tissue
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 38AMP
Genome assembly (visualization)
  • 13GRCh38
  • 12hg19
Lab
  • 38AMP-T2D consortium
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

38 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve1115
tibial artery511
gastrocnemius medialis14
muscle of leg11
distal epiphysis of femur1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego