Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
82
accessible chromatin
72
gene expression
62
target gene predictions
47
candidate regulatory elements
37
differential activity
34
chromatin state
23
eQTL
20
histone modifications
18
binding sites
11
variant allelic effects
8
Fine-mapped variants
2
sQTL
2
variant to gene
1
caQTL
Date released
89
September, 2022
54
February, 2021
51
March, 2023
45
February, 2024
36
May, 2021
23
November, 2021
20
January, 2021
19
March, 2020
18
August, 2021
9
June, 2020
9
May, 2020
7
August, 2018
7
January, 2020
6
August, 2017
6
October, 2019
5
January, 2022
4
February, 2020
3
November, 2019
2
May, 2022
1
April, 2019
1
February, 2023
1
January, 2018
1
July, 2020
1
October, 2022
1
September, 2018
Available data
260
bed bed3+
104
tsv
80
bigWig
27
bed bed9
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
419
Homo sapiens
Biosample type
175
primary cell
172
tissue
62
cell line
10
in vitro differentiated cells
Organ
935
epithelium
652
kidney
466
brain
459
connective tissue
375
musculature of body
311
lung
289
intestine
266
vasculature
263
pancreas
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
artery
73
adrenal gland
73
placenta
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
374
AMP
23
ENCODE
20
T1D
2
community
Genome assembly (visualization)
296
hg19
121
GRCh38
2
hg18
files.file_type!
bigBed narrowPeak
organ_slims!
artery
penis
BIOSAMPLE
TYPE
419 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
differential activity
chromatin state
eQTL
histone modifications
binding sites
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
caQTL
primary cell
hepatocyte
8
13
3
1
1
4
1
2
pancreatic ductal cell
5
3
3
3
2
1
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic acinar cell
5
3
3
3
1
pancreatic beta cell
7
3
2
3
+ See 17 more…
tissue
liver
4
1
10
13
1
9
7
2
1
1
islet of Langerhans
6
11
1
3
13
1
2
1
2
2
2
body of pancreas
2
5
8
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
endocrine pancreas
4
7
4
+ See 8 more…
cell line
EndoC_BH1
8
8
1
3
1
HepG2
2
3
2
2
5
3
HuH-7
1
1
1
1
1
1
Panc1
2
2
1
8988T
1
1
1
+ See 5 more…
in vitro differentiated cells
hepatocyte
1
2
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
See all biosamples
Download