Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ChIP-seq
  • 189total RNA-seq
  • 22ATAC-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 200DNA binding
  • 193Transcription
  • 23DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 108control
  • 68histone modification
  • 67histone
  • 46narrow histone mark
  • 24transcription factor
  • 21broad histone mark
  • 3RNA binding protein
  • 1recombinant protein
Date released
  • 194May, 2020
  • 66November, 2017
  • 48August, 2017
  • 40May, 2022
  • 35August, 2021
  • 13December, 2017
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2November, 2018
  • 1December, 2018
  • 1February, 2020
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 433Homo sapiens
Biosample type
  • 312tissue
  • 108cell line
  • 12primary cell
  • 1in vitro differentiated cells
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 433AMP
Genome assembly (visualization)
  • 271hg19
  • 205GRCh38
Lab
  • 362AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

433 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver10716720311111
right lobe of liver33121
cell line
HepG28514112221
primary cell
hepatocyte451
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
in vitro differentiated cells
hepatocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego