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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 46ATAC-seq
  • 31ChIP-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 46DNA accessibility
  • 31DNA binding
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 22control
  • 5histone
  • 5histone modification
  • 4broad histone mark
  • 4transcription factor
  • 1narrow histone mark
Date released
  • 66February, 2021
  • 35February, 2023
  • 14October, 2019
  • 12July, 2019
  • 11May, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 153Homo sapiens
Biosample type
  • 71tissue
  • 66cell line
  • 16primary cell
Organ
  • 855pancreas
  • 656connective tissue
  • 481adipose tissue
  • 448epithelium
  • 433liver
  • 299heart
  • 250kidney
  • 159bone element
  • 159brain
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 20lung
  • 17nerve
  • 16skeleton
  • 15blood
  • 15bodily fluid
  • 12spleen
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 153AMP
Genome assembly (visualization)
  • 109GRCh38
  • 83hg19
Lab
  • 153AMP-T2D consortium
Audit category:
  • 1audit script error
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

153 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
tissue
coronary artery1362
aorta124121
thoracic aorta214
tibial artery115
ascending aorta23
cell line
smooth muscle cell of the coronary artery5286
primary cell
endothelial cell of umbilical vein72
brain microvascular endothelial cell11
choroid plexus epithelial cell11
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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