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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1069ChIP-seq
  • 504ATAC-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1069DNA binding
  • 590DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 626histone modification
  • 625histone
  • 365narrow histone mark
  • 337control
  • 259broad histone mark
  • 109transcription factor
  • 21RNA binding protein
  • 8recombinant protein
  • 2chromatin remodeller
Date released
  • 279August, 2017
  • 218October, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 133August, 2021
  • 110February, 2023
  • 94November, 2017
  • 66February, 2021
  • 57July, 2019
  • 49March, 2020
  • 44December, 2017
  • 41November, 2019
  • 40May, 2024
  • 32September, 2018
  • 29October, 2018
  • 24February, 2018
  • 23May, 2019
  • 17October, 2017
  • 16April, 2019
  • 16January, 2021
  • 14November, 2018
  • 11May, 2023
  • 9April, 2020
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
  • 1November, 2020
Available data
  • 2050bam
  • 1832bigWig
  • 1811bed narrowPeak
  • bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1933Homo sapiens
Biosample type
  • 897tissue
  • 605primary cell
  • 239in vitro differentiated cells
  • 184cell line
  • 8stem cell
Organ
  • 364pancreas
  • 244epithelium
  • 243liver
  • 180connective tissue
  • 138brain
  • 137heart
  • 122kidney
  • 88vasculature
  • 86blood vessel
  • 80adipose tissue
  • 60artery
  • 41musculature of body
  • 36eye
  • 35limb
  • 23embryo
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 13bone element
  • 12skeleton
  • 12spleen
  • 10lung
  • 9vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1592AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 918hg19
  • 799GRCh38
  • 5hg18
Lab
  • 1327AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 103inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

1933 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans71687431
liver107203111
kidney975611
left cardiac atrium40
subcutaneous abdominal adipose tissue363
primary cell
monocyte8515211
pancreatic alpha cell1329311
Langerhans cell48
pancreatic beta cell1316161
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
adipocyte6761
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
definitive endodermal cell81
cell line
HepG285115221
EndoC_BH115191232
smooth muscle cell of the coronary artery68
Panc171
GM1287861
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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