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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 280ChIP-seq
  • 241total RNA-seq
  • 192ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 347Transcription
  • 280DNA binding
  • 206DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 162histone
  • 162histone modification
  • 103narrow histone mark
  • 77control
  • 59broad histone mark
  • 49transcription factor
  • 9RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 148May, 2021
  • 144May, 2020
  • 98October, 2019
  • 66August, 2021
  • 58July, 2019
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 40November, 2017
  • 39April, 2018
  • 38August, 2017
  • 25February, 2020
  • 24November, 2019
  • 17December, 2017
  • 10November, 2020
  • 7December, 2019
  • 7October, 2017
  • 6January, 2019
  • 5January, 2021
  • 5March, 2019
  • 4November, 2018
  • 3August, 2018
  • 3October, 2022
  • 2June, 2019
  • 2May, 2019
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2018
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 950Homo sapiens
Biosample type
  • 399primary cell
  • 271tissue
  • 166in vitro differentiated cells
  • 110cell line
  • 4stem cell
Organ
  • 184pancreas
  • 119epithelium
  • 83liver
  • 75brain
  • 54connective tissue
  • 39kidney
  • 29heart
  • 20vasculature
  • 19blood vessel
  • 16adipose tissue
  • 13embryo
  • 13musculature of body
  • 9bone element
  • 8skeleton
  • 7artery
  • 7vein
  • 6blood
  • 6bodily fluid
  • 4limb
  • 2eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 779AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 646hg19
  • 517GRCh38
Lab
  • 732AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 113inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 14missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

950 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
pancreatic beta cell1111
tissue
islet of Langerhans22103762134
liver93111
brain11111
heart53111
kidney114
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte7161
cardiomyocytes12
cell line
HepG242512112
EndoC_BH122263
H1-hESC8
Panc151
RCC 7860 HIF1a re-expression41
stem cell
hESC3
mesenchymal stem cell1
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