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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 172ChIP-seq
  • 102ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 172DNA binding
  • 109DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 127histone
  • 127histone modification
  • 88narrow histone mark
  • 39broad histone mark
  • 30transcription factor
  • 17control
  • 7RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 48August, 2021
  • 47February, 2023
  • 47October, 2019
  • 44July, 2018
  • 39April, 2018
  • 34July, 2019
  • 32August, 2017
  • 32March, 2020
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2017
  • 1February, 2018
  • 1June, 2018
  • 1June, 2019
  • 1March, 2023
  • 1November, 2019
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 617Homo sapiens
Biosample type
  • 293primary cell
  • 213tissue
  • 110in vitro differentiated cells
  • 1stem cell
Organ
  • 135pancreas
  • 79epithelium
  • 61brain
  • 47connective tissue
  • 18heart
  • 16adipose tissue
  • 13kidney
  • 13liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 475AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 464hg19
  • 393GRCh38
Lab
  • 443AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 45inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

617 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans1022186224
liver2411
brain61
heart2111
skeletal muscle tissue1111
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
cardiomyocytes12
adipocyte1721
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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