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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 108ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 108DNA binding
  • 97DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 60control
  • 35histone
  • 35histone modification
  • 20broad histone mark
  • 19transcription factor
  • 15narrow histone mark
  • 7recombinant protein
  • 3nucleotide modification
  • 2RNA binding protein
Date released
  • 56May, 2020
  • 51October, 2019
  • 40November, 2017
  • 32February, 2021
  • 24July, 2019
  • 23November, 2019
  • 18August, 2021
  • 16December, 2017
  • 16March, 2020
  • 14May, 2021
  • 7December, 2019
  • 6August, 2017
  • 6February, 2023
  • 6January, 2019
  • 6November, 2020
  • 4November, 2018
  • 3January, 2021
  • 2May, 2019
  • 1December, 2018
  • 1July, 2018
  • 1June, 2019
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 333Homo sapiens
Biosample type
  • 110cell line
  • 106primary cell
  • 58tissue
  • 56in vitro differentiated cells
  • 3stem cell
Organ
  • 70liver
  • 49pancreas
  • 40epithelium
  • 26kidney
  • 14brain
  • 13vasculature
  • 12blood vessel
  • 11embryo
  • 11heart
  • 7connective tissue
  • 6vein
  • 4blood
  • 4bodily fluid
  • 4musculature of body
  • 3artery
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 304AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 182hg19
  • 124GRCh38
Lab
  • 289AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 68inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

333 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
cell line
HepG242152112
EndoC_BH122263
H1-hESC8
Panc151
RCC 7860 HIF1a re-expression41
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
endothelial cell of umbilical vein6
hepatocyte51
tissue
islet of Langerhans1911
brain511
liver511
heart51
kidney14
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
Posterior foregut3
stem cell
hESC3
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