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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 259ChIP-seq
Assay category
  • 259DNA binding
Target of assay
  • 626histone modification
  • 625histone
  • 365narrow histone mark
  • 343control
  • 259broad histone mark
  • 109transcription factor
  • 21RNA binding protein
  • 8recombinant protein
  • 5nucleotide modification
  • 2chromatin remodeller
Date released
  • 91August, 2017
  • 76May, 2021
  • 20May, 2024
  • 17October, 2019
  • 17September, 2018
  • 9August, 2021
  • 8February, 2018
  • 6November, 2019
  • 5December, 2017
  • 5November, 2017
  • 5October, 2017
Available data
  • 427bigWig
  • 420bed narrowPeak
  • 378bam
  • bigBed narrowPeak
  • 147tagAlign
  • 118fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 259Homo sapiens
Biosample type
  • 101primary cell
  • 99tissue
  • 49in vitro differentiated cells
  • 9cell line
  • 1stem cell
Organ
  • 48pancreas
  • 40connective tissue
  • 30epithelium
  • 23heart
  • 21liver
  • 20adipose tissue
  • 12brain
  • 12musculature of body
  • 4blood vessel
  • 4embryo
  • 4vasculature
  • 4vein
  • 3kidney
Project
  • 215AMP
  • 44T1D
Genome assembly (visualization)
  • 165hg19
  • 150GRCh38
Lab
  • 164AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 23missing controlled_by
Audit category:
  • 7inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

259 results

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Clear Filters
ChIP-seq
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
pancreatic ductal cell6
endothelial cell of umbilical vein4
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
liver18
islet of Langerhans14
skeletal muscle tissue12
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
EndoC_BH16
HepG22
Panc11
stem cell
hESC1
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