Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 365ChIP-seq
Assay category
  • 365DNA binding
Target of assay
  • 626histone modification
  • 625histone
  • 365narrow histone mark
  • 343control
  • 259broad histone mark
  • 109transcription factor
  • 21RNA binding protein
  • 8recombinant protein
  • 5nucleotide modification
  • 2chromatin remodeller
Date released
  • 121October, 2019
  • 76August, 2017
  • 64May, 2021
  • 27May, 2020
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 10November, 2017
  • 9December, 2017
  • 8February, 2018
  • 4November, 2019
  • 3March, 2020
  • 1April, 2019
  • 1October, 2017
Available data
  • 440bigWig
  • 429bed narrowPeak
  • 405bam
  • 174tagAlign
  • bigBed narrowPeak
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 365Homo sapiens
Biosample type
  • 216tissue
  • 89primary cell
  • 50in vitro differentiated cells
  • 9cell line
  • 1stem cell
Organ
  • 84brain
  • 54pancreas
  • 46liver
  • 34epithelium
  • 28connective tissue
  • 18heart
  • 11adipose tissue
  • 8embryo
  • 7musculature of body
  • 5kidney
  • 4gonad
  • 4ovary
  • 2eye
  • 1blood vessel
  • 1limb
  • 1lymph node
  • 1pituitary gland
  • 1vasculature
  • 1vein
Project
  • 321AMP
  • 44T1D
Genome assembly (visualization)
  • 278hg19
  • 262GRCh38
Lab
  • 288AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 27missing controlled_by
Audit category:
  • 8inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

365 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver41
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
skeletal muscle tissue7
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
pancreatic acinar cell4
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
Hepatic endoderm2
cell line
EndoC_BH16
HepG23
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego