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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
Assay category
  • 109DNA binding
Target of assay
  • 626histone modification
  • 625histone
  • 365narrow histone mark
  • 343control
  • 259broad histone mark
  • 109transcription factor
  • 21RNA binding protein
  • 8recombinant protein
  • 5nucleotide modification
  • 2chromatin remodeller
Date released
  • 45August, 2017
  • 16May, 2021
  • 11August, 2021
  • 9December, 2017
  • 8November, 2017
  • 7October, 2019
  • 5February, 2021
  • 5May, 2024
  • 1April, 2019
  • 1November, 2018
  • 1November, 2019
Available data
  • 496bigWig
  • 485bam
  • 469bed narrowPeak
  • 454fastq
  • bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 109Homo sapiens
Biosample type
  • 47in vitro differentiated cells
  • 33cell line
  • 29tissue
Organ
  • 34connective tissue
  • 24liver
  • 12adipose tissue
  • 9heart
  • 9pancreas
  • 8kidney
  • 4artery
  • 4blood vessel
  • 4vasculature
  • 3embryo
  • 2epithelium
Project
  • 109AMP
Genome assembly (visualization)
  • 86hg19
  • 76GRCh38
Lab
  • 81AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 10inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

109 results

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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
cell line
HepG220
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
RCC 7860 vector2
tissue
white adipose tissue12
islet of Langerhans7
left cardiac atrium5
liver4
kidney1
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