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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
1
WGBS
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
5
March, 2020
3
February, 2020
1
July, 2019
Available data
180
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
70
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
82
Homo sapiens
Biosample type
65
tissue
10
cell line
7
primary cell
Organ
223
kidney
209
pancreas
169
heart
149
epithelium
101
bone element
97
liver
87
connective tissue
81
vasculature
80
blood vessel
61
brain
56
artery
55
eye
45
adipose tissue
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
fastq
month_released!
January, 2019
BIOSAMPLE
ASSAY
82 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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