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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
20
ChIP-seq
2
RRBS
2
WGBS
1
single cell RNA-seq
Assay category
43
DNA accessibility
20
DNA binding
4
DNA methylation
1
Transcription
Target of assay
20
control
Date released
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
4
July, 2019
2
June, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
Organism
68
Homo sapiens
Biosample type
55
tissue
10
cell line
3
primary cell
Organ
307
pancreas
210
kidney
208
epithelium
155
liver
110
connective tissue
101
bone element
68
heart
68
vasculature
67
blood vessel
63
adipose tissue
52
artery
50
brain
50
eye
28
limb
23
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
8
embryo
8
spleen
5
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
68
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
68
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
hic
tsv
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
RRBS
WGBS
single cell RNA-seq
tissue
coronary artery
35
2
heart left ventricle
6
1
2
heart
2
1
right atrium auricular region
3
heart right ventricle
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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