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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
30
total RNA-seq
4
WGBS
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
119
DNA binding
31
Transcription
6
DNA methylation
3
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
transcription factor
2
RNA binding protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
3
February, 2021
2
July, 2019
1
December, 2018
1
February, 2020
1
March, 2020
November, 2018
1
October, 2019
Available data
628
bam
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
166
Homo sapiens
Biosample type
95
tissue
67
cell line
3
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
222
kidney
214
epithelium
166
heart
166
liver
114
connective tissue
101
bone element
78
vasculature
77
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
11
blood
11
bodily fluid
8
embryo
6
spleen
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
130
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
hic
month_released!
November, 2018
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
51
9
2
1
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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