Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
45
ATAC-seq
6
single cell RNA-seq
6
total RNA-seq
5
WGBS
4
pCHi-C
1
RNA microarray
Assay category
81
DNA binding
45
DNA accessibility
12
Transcription
5
DNA methylation
Target of assay
44
control
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
Date released
40
August, 2017
36
February, 2023
18
October, 2018
14
October, 2019
11
May, 2019
10
February, 2021
7
August, 2021
5
February, 2020
3
March, 2020
1
August, 2018
1
July, 2019
1
May, 2023
1
November, 2019
Available data
622
bam
bigWig
470
tsv
142
bed narrowPeak
89
bigBed narrowPeak
47
fastq
17
bed bed3+
16
bed broadPeak
15
bigBed broadPeak
14
tagAlign
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
hic
2
hdf5
1
tar
Organism
147
Homo sapiens
Biosample type
132
tissue
10
cell line
5
primary cell
1
in vitro differentiated cells
Organ
316
pancreas
222
kidney
217
epithelium
167
liver
166
heart
114
connective tissue
101
bone element
78
vasculature
77
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
Genome assembly (visualization)
45
GRCh38
11
hg19
Lab
148
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
hic
BIOSAMPLE
ASSAY
148 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
RNA microarray
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
aorta
2
4
1
1
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
endothelial cell of umbilical vein
5
in vitro differentiated cells
white fat cell
1
See all biosamples
Download