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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
21
total RNA-seq
13
ChIP-seq
6
Hi-C
6
RRBS
5
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA accessibility
22
Transcription
13
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
8
histone
8
histone modification
5
control
4
broad histone mark
4
narrow histone mark
Date released
31
February, 2023
21
October, 2019
11
August, 2017
6
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
2
May, 2022
1
May, 2019
Available data
93
bed narrowPeak
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
76
tissue
5
primary cell
Organ
318
pancreas
223
kidney
221
epithelium
167
heart
125
liver
101
bone element
93
connective tissue
79
vasculature
78
blood vessel
59
adipose tissue
55
eye
54
artery
31
limb
28
brain
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
34
hg19
Lab
81
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
tagAlign
month_released!
June, 2018
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
skeletal muscle tissue
7
4
1
1
gastrocnemius medialis
1
4
+ See 3 more…
primary cell
retinal pigment epithelial cell
1
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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