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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
29
ChIP-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
Assay category
29
DNA accessibility
29
DNA binding
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
broad histone mark
12
narrow histone mark
12
transcription factor
5
RNA binding protein
5
control
Date released
263
August, 2021
202
February, 2023
180
May, 2022
161
February, 2021
95
October, 2019
83
May, 2021
67
August, 2017
58
May, 2020
56
September, 2020
51
November, 2017
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
October, 2017
1
September, 2018
Available data
bigWig
233
bam
173
tsv
69
bed narrowPeak
tagAlign
2
bed bed3+
Organism
83
Homo sapiens
Biosample type
33
primary cell
32
in vitro differentiated cells
16
cell line
2
tissue
Organ
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
66
AMP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
50
Kyle Gaulton, UCSD
33
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
tagAlign
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
13
1
1
1
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
27
5
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
See all biosamples
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