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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
2
RRBS
2
pCHi-C
1
ATAC-seq
Assay category
46
DNA binding
12
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
9
October, 2017
9
October, 2019
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
242
bam
bigWig
202
bed narrowPeak
127
bigBed narrowPeak
117
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
63
Homo sapiens
Biosample type
62
tissue
1
primary cell
Organ
317
pancreas
223
epithelium
169
heart
168
liver
161
kidney
114
connective tissue
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
14
blood
14
bodily fluid
13
bone element
12
nerve
12
skeleton
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
txt
vcf
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
total RNA-seq
RRBS
pCHi-C
ATAC-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 21 more…
primary cell
choroid plexus epithelial cell
1
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